PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534893.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 474aa    MW: 52590.9 Da    PI: 8.363
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534893.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05133155123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_010534893.1 133 FVCEICNKGFQRDQNLQLHRRGH 155
                     89*******************88 PP

2zf-C2H213.50.00022210232123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_010534893.1 210 WKCEKCSKRYAVQSDWKAHSKTC 232
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-5132155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.07E-7132155No hitNo description
PfamPF121717.5E-5133155IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949133155IPR007087Zinc finger, C2H2
SMARTSM003550.017133155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
SMARTSM00355100175205IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.3E-5198231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.07E-7205230No hitNo description
SMARTSM00355130210230IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MYLYIYDGDD GELWVPFLVL RMRGEGMMMN KDVLFHHHQQ QQQQQVVAED NMSNLTSASG  60
DQASVSSGNN RTEASGSNFV NPQQQQQLQY FVQQPQAQSS QPPKKKRNQP GNPDPEAEVI  120
ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSKTEVV RKKVYVCPEP  180
SCVHHDPSRA LGDLTGIKKH FFRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTKEYRCD  240
CGTLFSRRDS FITHRAFCDA LAEESAKAVP THQPNPLMVQ SSSSSHNLIT TLENYSTDSN  300
PHPFSMKKEH EGSFNHTLTF PPWLSPSNPN PSAGLFPFGP ATAASFHHPS PPSPAISATA  360
LLQRAAQMGP TKTTPSSLNL ATTMAEAMMA SPASMFQGYD AMSTNSAAGL EAFDESFGGL  420
LRAEEKNGGG EGLTRDFLGL RPLSHSDILS FAGIGDCFNG NVPEQQQQQN HSQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161172KQRSKTEVVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534893.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
SwissprotQ8H1F51e-169IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0D3BN381e-180A0A0D3BN38_BRAOL; Uncharacterized protein
STRINGAl_scaffold_0001_48851e-175(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-149indeterminate(ID)-domain 7